ADVANCED STATISTICAL COMPUTING Syllabus

140.778.01 | AY 2013-2014 - 2nd Term | 3 Credit(s)
MW 10:30:00 AM
  • Contact Information
    Faculty
    Roger Peng
  • Course Learning Objectives

    Upon successfully completing this course, students will be able to:

    • describe common deterministic statistical algorithms, such as root finding, numerical integration methods, Newton-Raphson, quasi-Newton methods, EM
    • describe common stochastic algorithms used in statistics, such as Monte Carlo methods, Markov Chain Monte Carlo, stochastic optimization, Gibbs sampling, Metropolis-Hastings method
    • Discuss mathematical properties of common statistical algorithms
    • implement statistical algorithms using a high-level statistical programming language
  • Course Description
    Covers the theory and application of common algorithms used in statistical computing. Topics include root finding, optimization, numerical integration, Monte Carlo, Markov chain Monte Carlo, stochastic optimization and bootstrapping. Some specific algorithms discussed include: Newton-Raphson, EM, Metropolis-Hastings algorithm, Gibbs sampling, simulated annealing, Gaussian quadrature, Romberg integration, etc. Also discusses applications of these algorithms to real research problems.
  • Intended Audience
    This course is primarily intended for Biostatistics doctoral students past their first year of study.
  • Methods of Assessment
    Method of student evaluation based on computing and theoretical assignments
  • Prerequisites
    Prior programming experience; at least one year of doctoral-level statistics/biostatistics theory and methods courses; 140.776
  • Required Text(s)

    Additional Faculty Notes:

    The first four weeks will cover some of the topics in Numerical Optimization by Jorge Nocedal and Stephen Wright.  You can download this book for free from the Springer website:

    http://www.springer.com/mathematics/book/978-0-387-30303-1

    And the first edition also appears to be available in full form here:

    http://science.fire.ustc.edu.cn/download/download1/book/mathematics/numerical_optimization/Numerical%20optimization.pdf 

  • Course Schedule

    Please see the course Session for a full list of dates and items for this course.

  • Academic Ethics Code

    Students enrolled in the Bloomberg School of Public Health of The Johns Hopkins University assume an obligation to conduct themselves in a manner appropriate to the University's mission as an institution of higher education. A student is obligated to refrain from acts which he or she knows, or under the circumstances has reason to know, impair the academic integrity of the University. Violations of academic integrity include, but are not limited to: cheating; plagiarism; knowingly furnishing false information to any agent of the University for inclusion in the academic record; violation of the rights and welfare of animal or human subjects in research; and misconduct as a member of either School or University committees or recognized groups or organizations.

  • Disability Support Services
    If you are a student with a documented disability who requires an academic accommodation, please contact the Office of Student Life Services at 410-955-3034 or via email at dss@jhsph.edu.